Biology Magazine

The Covid-19 Plateau

Posted on the 17 May 2020 by Ccc1685 @ccc1685

For the past five weeks, the appearance rate of Covid-19 cases has plateaued at about a hundred thousand new cases per day. Just click on the Daily Cases Tab on the JHU site to see for yourself. This is quite puzzling because while individual nations and regions are rising, falling, and plateauing independently, the global total is flat as a pancake. A simple resolution to this seeming paradox was proposed by economist John Cochrane (see his post here). The solution is rather simple but the implications as I will go into more detail below are far reaching. The short answer is that if the world (either through behavior or policy) reacts to the severity of Covid-19 incrementally then a plateau will arise. When cases go up, people socially distance, and the number goes down, when cases go down, they relax a little and it goes back up again.

This can be made more precise with the now-famous SIR model. For the uninitiated, SIR stands for Susceptible Infected Recovered model. It is a simple dynamical model of disease propagation that has been in use for almost a century. The basic premise of an SIR model is that at any given time, the proportion of the population is either infected with the virus I, susceptible to infection S, or recovered from infection and no longer susceptible R. Each time an S comes across an I, it has a chance of being infected and becoming another I. An I will recover (or die) with some rate and become an R. The simplest way to implement an SIR model is to assume that people interact completely randomly and uniformly across the population and the rate of transmission and recovery is uniform as well. This is of course a gross simplification and ignores the complexity and diversity of social interactions, the mechanisms of actual viral transmission, and the progression of disease within individuals. However, even though it misses all of these nuances, it captures many of the important dynamics of epidemics. In differential equation form, the SIR model is written as

The Covid-19 plateau

The Covid-19 plateau (SIR model)

where The Covid-19 plateau is the total number of people in the population of interest. Here, The Covid-19 plateau and The Covid-19 plateau are in units of number of people. The left hand sides of these equations are derivatives with respect to time, or rates. They have dimensions or units of people per unit time, say day. From this we can infer that The Covid-19 plateau and The Covid-19 plateau must have units of inverse day (per day) since The Covid-19 plateau, The Covid-19 plateau, and The Covid-19 plateau all have units of numbers of people. Thus The Covid-19 plateau is the infection rate per day and The Covid-19 plateau is the recovery/death rate per day. The equation assumes that the probability of an The Covid-19 plateau meeting an The Covid-19 plateau is The Covid-19 plateau. If there was one infected person in a population of a hundred, then if you were to interact completely randomly with everyone then the chance you would run into an infected person is 1/100. Actually, it would be 1/99 but in a large population, the one becomes insignificant and you can round up. Right away, we can see a problem with this assumption. I interact regularly with perhaps a few hundred people per week or month but the chance of me meeting a person that had just come from Australia in a typical week is extremely low. Thus, it is not at all clear what we should use for The Covid-19 plateau in the model. The local population, the regional population, the national population?

The model assumes that once an The Covid-19 plateau has run into an The Covid-19 plateau, the rate of transmission of the virus is The Covid-19 plateau. The total rate of decrease of The Covid-19 plateau is the product of The Covid-19 plateau and The Covid-19 plateau. The rate of change of The Covid-19 plateau is given by the increase due to interactions with The Covid-19 plateau and the decrease due to recovery/death The Covid-19 plateau. These terms all have units of person per day. Once you understand the basic principles of constructing differential equations, you can model anything, which is what I like to do. For example, I modeled the temperature dynamics of my house this winter and used it to optimize my thermostat settings. In a post from a long time ago, I used it to model how best to boil water.

Given the SIR model, you can solve them to get how The Covid-19 plateau and The Covid-19 plateau will change in time. The SIR model is a system of nonlinear differential equations that do not have what is called a closed-form solution, meaning you can't write down that The Covid-19 plateau is some nice function like The Covid-19 plateau or The Covid-19 plateau. However, you can solve them numerically on a computer or infer properties of the dynamics directly without actually solving them. For example, if The Covid-19 plateau is initially greater than The Covid-19 plateau, then $dI/dt$ is positive and thus $I$ will increase with time. On the other hand, since The Covid-19 plateau is always negative (rate of change is negative), it will decrease in time. As The Covid-19 plateau increases and The Covid-19 plateau decreases, since The Covid-19 plateau is decreasing at a faster rate than The Covid-19 plateau is increasing because The Covid-19 plateau is slowing the growth of The Covid-19 plateau, then at some point The Covid-19 plateau will equal The Covid-19 plateau and The Covid-19 plateau. This is a stationary point of The Covid-19 plateau. However, it is only a momentary stationary point because The Covid-19 plateau keeps decreasing and this will make The Covid-19 plateau start to decrease too and thus this stationary point is a maximum point. In the SIR model, the stationary point is given by the condition

The Covid-19 plateau (Stationary condition)

which you can solve to get either The Covid-19 plateau or The Covid-19 plateau. The The Covid-19 plateau point is not a peak but just reflects the fact that there is no epidemic if there are no infections. The other condition gives the peak:

The Covid-19 plateau

where The Covid-19 plateau is the now-famous R naught or initial reproduction number. It is the average number of people infected by a single person since The Covid-19 plateau is the infection rate and The Covid-19 plateau is the infection disappearance rate, the ratio is a number. The stationary condition gives the herd immunity threshold. When the fraction of The Covid-19 plateau reaches The Covid-19 plateau then the pandemic will begin to decline. This is usually expressed as the fraction of those infected and no longer susceptible, The Covid-19 plateau. The 70% number you have heard is because The Covid-19 plateau is approximately 70% for The Covid-19 plateau, the presumed value for Covid-19.

A plateau in the number of new cases per day is an indication that we are at a stationary point in The Covid-19 plateau. This is because only a fraction of the total infected are counted as cases and if we assume that the case detection rate is uniform across all The Covid-19 plateau, then the number of new cases per day is proportional to The Covid-19 plateau. Thus, a plateau in cases means we are at a stationary point in The Covid-19 plateau, which we saw above only occurs at a single instance in time. One resolution to this paradox would be if the peak is broad so it looks like a plateau. We can compute how broad the peak is from the second derivative, which gives the rate of change of the rate of change. This is the curvature of the peak. Taking the second derivative of the I equation in the SIR model gives

The Covid-19 plateau

Using The Covid-19 plateau and the formula for The Covid-19 plateau at the peak, the curvature is

The Covid-19 plateau

It is negative because at a peak the slope is decreasing. (A hill is easier to climb as you round the top.) There could be an apparent plateau if the curvature is very small, which is true if The Covid-19 plateau is small compared to The Covid-19 plateau. However, this would also mean we are already at the herd immunity threshold, which our paper and recent anti-body surveys predict to be unlikely given what we know about The Covid-19 plateau.

If a broad peak at the herd immunity threshold does not explain the plateau in new global daily cases then what does? Cochrane's theory is that The Covid-19 plateau depends on The Covid-19 plateau. He postulated that The Covid-19 plateau,where The Covid-19 plateau is the initial infectivity rate, but any decreasing function will do. When The Covid-19 plateau goes up, The Covid-19 plateau goes down. Cochrane attributes this to human behavior but it could also be a result of policy and government mandate. If you plug this into the stationary condition you get

The Covid-19 plateau

or

The Covid-19 plateau

and the effective reproduction number The Covid-19 plateau is one.

However, this is still only a quasi-stationary state because if The Covid-19 plateau is a constant The Covid-19 plateau, then The Covid-19 plateau will decrease as The Covid-19 plateau, which has solution

The Covid-19 plateau (S)

Plugging this into the equation for The Covid-19 plateau gives

The Covid-19 plateau

which means that The Covid-19 plateau is not really plateaued but is decreasing slowly as

The Covid-19 plateau

We can establish perfect conditions for a plateau if we work backwards. Suppose again that The Covid-19 plateau has plateaued at The Covid-19 plateau. Then, The Covid-19 plateau is given by equation (S). Substituting this into the (Stationary Condition) above then gives The Covid-19 plateau or

The Covid-19 plateau

which means that the global plateau is due to us first reducing The Covid-19 plateau to near The Covid-19 plateau, which halted the spread locally, and then gradually relaxing pandemic mitigation measures so that The Covid-19 plateau is creeping upwards back to it's original value.

The Covid-19 plateau is both good news and bad news. It is good news because we are not seeing exponential growth of the pandemic. Globally, it is more or less contained. The bad news is that by increasing at a rate of a hundred thousand cases per day, it will take a long time before we reach herd immunity. If we make the naive assumption that we won't reach herd immunity until 5 billion people are infected then this pandemic could blunder along for The Covid-19 plateau days! In other words, the pandemic will keep circling the world forever since over that time span, babies will be born and grow up. Most likely, it will become less virulent and will just join the panoply of diseases we currently live with like the various varieties of the common cold (which are also corona viruses) and the flu.


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